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Working Group 1

 

 

Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy

The Consortium for Quality Assessment and Reproducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi), formed by the global community of practitioners, researchers, developers, service providers, funders, publishers, policy makers and industry related to the use of light microscopy, is committed to democratizing access to quantitative and reproducible light microscopy and the data generated by it.

Our mission is to provide a comprehensive set of community-agreed guidelines, protocols, automation procedures and other resources aimed at improving quality control, quality assurance, and instrument/method calibration. The stakeholders advocate for the use of the highest level of reproducibility for data generated by light microscopy methods in scientific research and biotechnology applications. In support of achieving its mission, QUAREP-LiMi:

  1. sanctions Working Groups to form teams that focus on specific technical or outreach topics;

  2. maintains, disseminates, and teaches best practices, protocols, and software tools; and

  3. collaborates with providers of reference materials or instrumentation or other tools that enable the easy implementation of best practices at the community level.

We came together in our first online Web meeting on the 28th of April, 2020, with about 50 attendees. By now (24st of April 2024), the network has grown to 620 people from 41 countries worldwide. We have members from academia (research labs, core facilities), national microscopy communities, companies involved in the microscopy business, organizations or institutions related to standardization on a national or international level, and scientific publishers and observers from funding agencies (see the graph below and on the member page for an overview).

Ten working groups (WGs) were established in the 2nd General Meeting on the 9th of July 2020 to bring our common aims quickly forward. Our web page gives an overview of QUAREP-LiMi’s work. In the 3rd General Meeting, WG 11 “Microscopy Publication Standards” and later WGs 12 “Image Visualization and Analysis” and 13 Phototoxicitywere established. WG 14 “Environment” and 15 “FLIM” are in the process of being established, and WG 8 is restructured to work on “Education, Training and Outreach”.

QUAREP-LiMi operates a NextCloud and an OMERO server, serving as a centralized repository and exchange point for our collective work. These platforms facilitate collaboration and data sharing among our members. 

QUAREP-LiMi is absolutely open to new members, and we are looking forward to your contribution. If you are interested in joining our initiative, please fill out our membership form. Use our form for changing your working group (WG) or joining a new WG. For any further questions, please contact us.

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Working Group 2

Working Group 3

Working Group 4

Working Group 5

Working Group 6

Working Group 7

12th meeting, 21st of February 2022

Meeting date

21/02/2022 @ 5:00 PM (CET/CEST)

Meeting summary

In this meeting we discussed:
  1. Revision of the WG7 main webpage on QUAREP.org
  2. Review progress done with WG2 to revise the Camera section of 4DN-BINA-OME-(QUAREP) Microscopy Metadata model in collaboration with Camera manufacturers and members of the Camera community.
  3. Review progress of SubGroup 2 (Metadata Education) and SubGroup 3 (Metadata Storage Specifications).
  4. Reminder: the novel SubGroup 4 (Model Revision) was formed but it did not convene yet because they are waiting for the end of the first phase of Camera community conversations. Please join us in this important work.

Meeting documentation

Subgroup Education and Outreach, 2nd meeting, 18th of February 2022

Meeting date

18/02/2022 @ 4:00 PM (CET/CEST)

Meeting documentation

Subgroup Storage, 3rd meeting, 10th of February 2022

Meeting date

10/02/2022 @ 4:00 AM (CET/CEST)

Meeting documentation

11th meeting, 17th of January 2022

Meeting documentation

Subgroup Capture Tools, 1st meeting, 2nd of December 2021

Meeting documentation

10th meeting, 15th of November 2021

Meeting documentation

Working Group 8

Working Group 9

Working Group 10

Working Group 11