Publications

Hammer, Mathias, Maximiliaan Huisman, Alessandro Rigano, Ulrike Boehm, James J. Chambers, Nathalie Gaudreault, Alison J. North, et al. “Towards Community-Driven Metadata Standards for Light Microscopy: Tiered Specifications Extending the OME Model.” Nature Methods, December 3, 2021, 1–14. https://doi.org/10.1038/s41592-021-01327-9. Cite
Swedlow, Jason R., Pasi Kankaanpää, Ugis Sarkans, Wojtek Goscinski, Graham Galloway, Leonel Malacrida, Ryan P. Sullivan, et al. “A Global View of Standards for Open Image Data Formats and Repositories.” Nature Methods, May 4, 2021, 1–7. https://doi.org/10.1038/s41592-021-01113-7. Cite
Moore, Josh, Chris Allan, Sébastien Besson, Jean-Marie Burel, Erin Diel, David Gault, Kevin Kozlowski, et al. “OME-NGFF: A next-Generation File Format for Expanding Bioimaging Data-Access Strategies.” Nature Methods, November 29, 2021, 1–3. https://doi.org/10.1038/s41592-021-01326-w. Cite
Montero Llopis, Paula, Rebecca A. Senft, Tim J. Ross-Elliott, Ryan Stephansky, Daniel P. Keeley, Preman Koshar, Guillermo Marqués, et al. “Best Practices and Tools for Reporting Reproducible Fluorescence Microscopy Methods.” Nature Methods, June 7, 2021, 1–14. https://doi.org/10.1038/s41592-021-01156-w. Cite
Sarkans, Ugis, Wah Chiu, Lucy Collinson, Michele C. Darrow, Jan Ellenberg, David Grunwald, Jean-Karim Hériché, et al. “REMBI: Recommended Metadata for Biological Images—Enabling Reuse of Microscopy Data in Biology.” Nature Methods, May 21, 2021, 1–5. https://doi.org/10.1038/s41592-021-01166-8. Cite
Kunis, Susanne, Sebastian Hänsch, Christian Schmidt, Frances Wong, Caterina Strambio-De-Castillia, and Stefanie Weidtkamp-Peters. “MDEmic: A Metadata Annotation Tool to Facilitate Management of FAIR Image Data in the Bioimaging Community.” Nature Methods, October 11, 2021, 1–2. https://doi.org/10.1038/s41592-021-01288-z. Cite
Ryan, Joel, Thomas Pengo, Alex Rigano, Paula Montero Llopis, Michelle S. Itano, Lisa A. Cameron, Guillermo Marqués, Caterina Strambio-De-Castillia, Mark A. Sanders, and Claire M. Brown. “MethodsJ2: A Software Tool to Capture Metadata and Generate Comprehensive Microscopy Methods Text.” Nature Methods, October 15, 2021, 1–3. https://doi.org/10.1038/s41592-021-01290-5. Cite
Rigano, Alessandro, Shannon Ehmsen, Serkan Utku Öztürk, Joel Ryan, Alexander Balashov, Mathias Hammer, Koray Kirli, et al. “Micro-Meta App: An Interactive Tool for Collecting Microscopy Metadata Based on Community Specifications.” Nature Methods, December 3, 2021, 1–7. https://doi.org/10.1038/s41592-021-01315-z. Cite
Boehm, Ulrike, Glyn Nelson, Claire M. Brown, Steve Bagley, Peter Bajcsy, Johanna Bischof, Aurelien Dauphin, et al. “QUAREP-LiMi: A Community Endeavor to Advance Quality Assessment and Reproducibility in Light Microscopy.” Nature Methods, May 21, 2021. https://doi.org/10.1038/s41592-021-01162-y. Cite
Nelson, Glyn, Ulrike Boehm, Steve Bagley, Peter Bajcsy, Johanna Bischof, Claire M. Brown, Aurelien Dauphin, et al. “QUAREP-LiMi: A Community-Driven Initiative to Establish Guidelines for Quality Assessment and Reproducibility for Instruments and Images in Light Microscopy.” ArXiv:2101.09153 [Physics, q-Bio], January 27, 2021. https://arxiv.org/abs/2101.09153. Cite