WG 5 – Lateral and axial resolution

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WG 5 – Objectives

This WG focuses on the microscope lateral and axial resolution, which is essential for reporting size measurements of near- resolution limit objects or distances between them. Resolution is highly related to the objective quality but depends strongly upon other parameters ranging from the sample preparation to the signal detection.

The WG aims to define sample preparation, image acquisition, and data analysis protocols for testing resolution, first using sub-resolution fluorescent bead preparations and second employing alternative pattern-based methods. Monitoring the resolution (Point Spread Function in the case of beads) over time will identify possible aberrations in the system. Pooling the data from multiple laboratories within the WG will allow them to compare reproducibility for sample preparation, data acquisition, and data analysis tools, thereby determining a robust, easy-to-use protocol to propose to the community.

WG 5 – Co-Chairs

WG 5 - Latest News

🎤 Glyn Nelson, Ioannis Alexopoulos, Yury Belyaev

The Point Spread Function (PSF), which describes the response of an optical system to a point source, is a key quality control of a microscope. Regular measurements, conducted with consistent tools, methods, and protocols, along with the calculation of robust metrics enable the monitoring of the microscope performance and therefore ensure better reproducibility of scientific experiments. During this workshop, we will show briefly how to prepare a bead slide, how to perform an acquisition, and finally how to analyze the PSF with open-source tools (1, 2). We will give some tips to troubleshooting PSFs that have an abnormal shape or are far from the theoretical expected size. We will also demonstrate the upload of the analysis results to OMERO, a database that will help monitor PSFs over time. We will use the protocols and metrics that are defined in the framework of the QUAREP-LiMi consortium’s WG5 (3).

Watch Presentation

1. Faklaris O., et al. “Quality Assessment in Light Microscopy for Routine Use through Simple Tools and Robust Metrics.” Journal of Cell Biology 221, no. 11 (2022): e202107093. https://doi.org/10.1083/jcb.202107093.

2. https://github.com/MontpellierRessourcesImagerie/MetroloJ_QC

3. Nelson G., et al. Protocolos.io, Monitoring the point spread function for quality control of confocal microscopes , dx.doi.org/10.17504/protocols.io.bp2l61ww1vqe/v1

We are pleased to announce that the QUAREP-LiMi consortium will be presenting five specialized workshops at the upcoming European Light Microscopy Institute (ELMI) meeting. Our sessions are designed to provide researchers with frameworks for improving image quality, ensuring data reproducibility, and implementing rigorous quality control standards in microscopy. The workshops will cover five critical pillars of instrument characterization:

  1. The QUAREP-LiMi Tool Kit (WGs 1 & 2):

    Discover how to streamline periodic quality assessments. We will present the latest developments in the Tool Kit, including user-friendly software tools for illumination power and stability (compatible with Nikon and Zeiss), as well as its data browser for long-term performance monitoring.
  2. Detector Performance & Photon Characterization (WG2):

    Learn how to transition from "arbitrary digital units" (ADU) to actual photon counts using the Photon Transfer Curve (PTC) method. We will demonstrate protocols for characterizing photon conversion factors, read noise, and dynamic range for both point and area detectors.
  3. Assessing the co-registration accuracy of a microscope (WG4):

    Chromatic aberration is a major source of spatial error in multi‑colour fluorescence microscopy. This workshop will show practical hints and tips to perform routine co‑registration measurement and analysis.
  4. Point Spread Function (PSF) Analysis (WG5):

    This workshop provides a practical guide to PSF measurement—from beads slide preparation and image acquisition to analysis using open-source tools and integration with OMERO for longitudinal monitoring.
  5. The Light-Microscopy Metadata Model (LiMi-Model, WG7):

    In collaboration with BioImaging North America, 4D Nucleome, and OME, we will introduce the LiMi-Model. This framework aims to harmonize the description of hardware and acquisition settings to ensure datasets are FAIR (Findable, Accessible, Interoperable, and Reusable) by design.
We look forward to engaging with you and hearing your feedback during these sessions!

We warmly welcome our first member from Ukraine, Dr. Borys Olifirov, from the Bogomoletz Institute of Physiology of NAS of Ukraine who just joined Working Group 2, 5, 6, 7 and 8.

 

Last meeting: 9th July 2026, 3:30 pm

62st meeting, 9th of July 2026

Meeting date

09/07/2026 @ 3:30 PM (CET/CEST)

Meeting summary

Meeting covered volunteers for elected posts, ELMI feedback, OMERO upload catch up and data collected so far to determine best bead size for ISM based systems. Lastly, a presentation from an intern at the French metrology group detailing software development for identifying aberrant PSFs.

Meeting documentation

61st meeting, 28th of May 2026

Meeting date

28/05/2026 @ 5:00 PM (CET/CEST)

Meeting summary

Discussed plans and proposals for reformatting our manuscript to cover method and justification for WG5 protocol. Also covered plans for Workshop presentation at ELMI this year.

Meeting documentation

58th meeting, 9th of April 2026

Meeting date

09/04/2026 @ 3:30 PM (CET/CEST)

Meeting documentation

57th meeting, 12th of March 2026

Meeting date

12/03/2026 @ 3:30 PM (CET/CEST)

Meeting documentation

56th meeting, 12th of February 2026

Meeting date

12/02/2026 @ 3:30 PM (CET/CEST)

Meeting documentation

55th meeting, 22nd of January 2026

Meeting date

22/01/2026 @ 3:30 PM (CET/CEST)

Meeting documentation

54th meeting, 11th of December 2025

Meeting date

11/12/2025 @ 3:30 PM (CET/CEST)

Meeting documentation

53rd meeting, 13th of November 2025

Meeting date

13/11/2025 @ 3:30 PM (CET/CEST)

Meeting documentation

52nd meeting, 9th of October 2025

Meeting date

09/10/2025 @ 3:30 PM (CET/CEST)

Meeting documentation

51st meeting, 18th of September 2025

Meeting date

18/09/2025 @ 3:30 PM (CET/CEST)

Meeting documentation

Memberlist WG 5