WG 12 - Objectives
The Image Analysis and Visualization Working Group (WG 12) will provide guidelines for scientists to publish accessible and understandable images, including their reproducible processing and analysis procedures. Publishing of light microscopy image data should include key information about image acquisition (Link:WG11), image reconstruction, processing and analysis, as well as image visualisation and image data availability (safeguarding e.g. in repositories).
WG12 will provide a white-paper, guidelines, training materials, teaching slides with example images, and an application of the guidelines in a video-tutorial. WG12 has members from academic and corporate research, and publishing. Members are active in image analysis, image publishing, image software design, and data visualisation.
WG 12 - Co-Chairs
Email:
helena.jambor@tu-dresden.de
Helena Jambor
Email:
schmied@fmp-berlin.de
Christopher Schmied
Co-Chair of WG 12
WG 12 - Latest News
The Journal Histochemistry and Cell Biology has announced to implement new submission guidelines for image presentation and image analysis, which have been published recently in Nature Methods by the international network Quality Assessment and Reproducibility for Instruments & Images in Light Microscopy (QUAREP-LiMi)-Working Group 12 - Image Analysis and Visualization .
- Arne Fallisch
- October 30, 2023
- 2:59 pm
The paper "Community-developed checklists for publishing images and image analyses" has been published in Nature Methods. You can access the publication here.
- Arne Fallisch
- September 15, 2023
- 9:28 am
The QUAREP community developed a checklist for publishing images and image analysis. You can access our publication here.
- Arne Fallisch
- February 15, 2023
- 9:10 am
Last meeting: 26th October 2023, 5:00 pm
A “Community-developed checklists for publishing images and image analyses” has been published in Nature Methods.
You can access the publication here.
Memberlist WG 12
Last name First Name Town Organisation Affiliation Lab Affiliation Country Time Zone
Acton
Richard
Cambridge
Human Developmental Biology Initiative
Univ.
GB
UTC+-0
Akçınar
Salim Can
Izmir
Ege University
Univ.
TR
UTC+3
Ali
Rizwan
Riyadh
King Abdullah International Medical Research Center
Univ.
SA
UTC+3
Alshafie
Walaa
Ashburn
Janelia research campus
Univ.
US
UTC-4
Avilov
Sergiy
Freiburg
Max Planck Institute of Immunobiology and Epigenetics
MPG
DE
UTC+2
Banerjee
Priyam
New York
Rockefeller University
Univ.
US
UTC-5
Barbu-Stevanovic
Mihaela
New York
New York Blood Center
Industry
US
UTC-6
Beavers
Nick
Rockville
Media Cybernetics
Industry
US
UTC-4
Belinova
Tereza
Klosterneuburg
Institute of Science and Technology Austria
Univ.
AT
UTC+1
Belyaev
Ivan
Jena
Friedrich Schiller University Jena
Univ.
DE
UTC+2
Bercowsky
Arianne
Zug
Dotphoton AG
Industry
CH
UTC+1
Bertocchi
Cristina
Santiago de Chile
Pontificia Universidad Católica de Chile
Univ.
CL
UTC-3
Block
Stephan
Berlin
Freie Universität Berlin
Univ.
DE
UTC+1
Boehm
Ulrike
Oberkochen
Carl Zeiss AG
Industry
DE
UTC-4
Bourn
Matthew
Leeds
National Measurement Laboratory
Industry
GB
UTC+1
Brocher
Jan
Ludwigshafen
BioVoxxel
Industry
DE
UTC+1
Brown
Mary
Saint Paul
University of Minnesota – Twin Cities
Univ.
US
UTC-6
Brunt
Peter
Fairport
AVR Optics
Industry
US
UTC-5
Budde
Kai
Rostock
University of Rostock
Univ.
DE
UTC+2
Čapek
Martin
Prague
Institute of Molecular Genetics of the Czech Academy of Sciences
Gov.
CZ
UTC+1
Carvalho
Mariana
Braga
INL – International Iberian Nanotechnology Laboratory
EU-Org
PT
UTC+-0
Catrina
Irina
New York
Yeshiva University
Univ.
US
UTC-5
Chacko
Jenu
Madison
University of Wisconsin Madison
Univ.
US
UTC-6
Chatterjee
Nabanita
Gothenburg
University of Gothenburg
Univ.
SE
UTC+1
Chen
Lily
Hayward
Eikon Therapeutics
Industry
US
UTC-8
Chinnaraj
Subash Bommu
Amstelveen
Nikon Europe B.V.
Industry
NL
UTC+1
Cho
Ellie
Carlton
The University of Melbourne
Univ.
AU
UTC+10
Cimini
Beth
Cambridge
Broad Institute
Univ.
US
UTC-4
Condon
Nicholas
Brisbane
University of Queensland
Univ.
AU
UTC+10
Contremoulins
Vincent
Paris
CNRS
Univ.
FR
UTC+2
Cuny
Andreas
Basel
ETH Zurich
Univ.
CH
UTC+2
Debarnot
Valentin
Viry
University of Basel
Univ.
FR
UTC+2
DELNERY
Elaine
Paris
Global-BioImaging
Univ.
FR
UTC+2
Diez-Guerra
F. Javier
Madrid
CBMSO (CSIC-UAM)
Univ.
ES
UTC+2
Donnelly
Katelynne
Fort Collins
Biotect Services
Industry
US
UTC+7
Dostál
Zbyněk
Brno
Brno University of Technology
Univ.
CZ
UTC+1
Eseola
Alice
Norwich
The Sainsbury Laboratory
Univ.
GB
UTC+1
Ewers
Helge
Berlin
Freie Universität Berlin
Univ.
DE
UTC+1
Fazeli
Elnaz
Helsinki
University of Turku/ University of Helsinki
Univ.
FI
UTC+1
Ferdous
Zannatul
Sapporo
Hokkaido University
Univ.
JP
UTC+9
Fuhrhop
Carlos
Valdivia
Universidad Austral de Chile
Univ.
CL
UTC+4
Gaboriau
David
London
Imperial College London
Univ.
GB
UTC+-0
Garcia Gonzalez
Esther
Didcot
STFC, UKRI
Gov.
GB
UTC+1
Gaudreault
Nathalie
Seattle
Allen Institute
Private lab
US
UTC-7
Gibbs
Holly
College Station
Texas A&M University
Univ.
US
UTC-6
Greenwood
Harrison
London
The Francis Crick Institute
Univ.
GB
UTC+-0
Gu
Tingting
Norman
University of Oklahoma
Univ.
US
UTC-6
Guaimas
Francisco
San Martin
CONICET-UNSAM
Gov.
AR
UTC-3
Hammer
Mathias
Worcester
University of Massachusetts Medical School
Univ.
US
UTC+5
Harizanova
Jana
Copenhagen
CFIM/University of Copenhagen
Univ.
DK
UTC+1
Hartley
Matthew
Cambridge
EMBL-EBI
EU-Org
GB
UTC+1
Hatto
Mao
Prague
Nikon
Industry
CZ
UTC+2
Held
Marie
Liverpool
University of Liverpool
Univ.
GB
UTC+-0
Herzog
Dylan
London
Microscopy Innovation Centre, King’s College London
Univ.
GB
UTC+-0
Ho
Kenneth
London
The Francis Crick Institute
Private lab
GB
UTC+-0
Hu
Jianjiang
Huddinge
Karolinska Institutet
Univ.
SE
UTC+1
Jambor
Helena
Dresden
TU Dresden
Univ.
DE
UTC+2
Kapoor
Varun
Paris
Kapoorlabs
EU-Org
FR
UTC+2
Koksoy
Ayse
Houston
MD Anderson CC
Univ.
US
UTC-6
Köning
Rainer
Braunschweig
PTB Braunschweig
Gov.
DE
UTC+1
Kugler
Elisabeth
London
UCL
Univ.
GB
UTC+-0
Kumar
Gaurav
Chandigarh
CSIR IMTECH
Gov.
IN
UTC-5
Laferriere
Pascal
Nepean
Teledyne Lumenera
Industry
CA
UTC-5
Landua
Kalika
Houston
Nikon Instruments
Industry
US
UTC-5
Le Guyader
Sylvie
Huddinge
Karolinska Institutet
Univ.
SE
UTC+1
Lee
James
Houston
Baylor College of Medicine
Univ.
US
UTC-6
Lees
Robert
Didcot
Science and Technology Facilities Council
Gov.
GB
UTC+-0
Liu
Penghuan
Hangzhou
China Jiliang University
Univ.
CN
UTC+8
Liu
Tristan
New York
Columbia University
Univ.
US
UTC-4
Martins
Gabriel
Oeiras
Inst. Gulbenkian de Ciencia
Private lab
PT
UTC+0
Mast
Fred
Seattle
Seattle Children’s Hospital
Univ.
US
UTC+8
Micu
Ileana
Belfast
Queen’s University Belfast
Univ.
GB
UTC+1
Miller
Caroline
Vallejo
Histology, Imaging, and Image Analysis consultancy
Private lab
US
UTC-8
Miranda
Gisele
Solna
KTH Royal Institute of Technology
Univ.
SE
UTC+1
Miura
Kota
Heidelberg
University of Heidleberg
Univ.
DE
UTC+1
Morello
Timothy
Brooklyn
SUNY Downstate
Univ.
US
UTC-4
Nechyporuk-Zloy
Volodymyr
London
Imperial College of Science, Technology and Medicine
Univ.
GB
UTC+-0
Nelson
Michael
Madison
University of of Wisconsin
Univ.
US
UTC-8
Nitschke
Roland
Freiburg
University of Freiburg, Life Imaging Center
Univ.
DE
UTC+2
Norlin
Nils
Lund
Lund University
Univ.
SE
UTC+1
Northan
Brian
Guilderland
True North Intelligent Algorithms
Industry
US
UTC+5
Oord
Kees
Amsterdam
Nikon
Industry
NL
UTC+1
Papadiamantis
Sotirios
Marseille
University of Aix-Marseille
Univ.
FR
UTC-2
Parslow
Adam
Melbourne
Baker Heart and Diabetes Institute
Private lab
AU
UTC+10
Paulucci
Adriana
Houston
MD Anderson CC
Univ.
US
UTC-6
Payne-Dwyer
Alex
York
University of York
Univ.
GB
UTC+-0
Pereira
Telmo
Lisbon
CEDOC
Univ.
PT
UTC+-0
Peterson
John
Cleveland
Cleveland Clinic Foundation
Private lab
US
UTC-5
Petrov
Eugene
Berlin
Bundesanstalt für Materialforschung und -prüfung
Gov.
DE
UTC+1
Piazza
Simonluca
Genoa
Genoa Instruments
Industry
IT
UTC+1
Piguet
Joachim
Stockholm
KTH Royal Institute of Technology
Univ.
SE
UTC+1
Plantard
Laure
Basel
Friedrich Miescher Institute for Biomedical Research
Private lab
CH
UTC+2
Pylvänäinen
Joanna
Turku
Åbo Akademi University
Univ.
FI
UTC+2
Rajasekhar
Pradeep
Parkville
Walter and Eliza Hall Institute of Medical Research
Univ.
AU
UTC+11
Sampaio
Paula
Porto
i3S
Univ.
PT
UTC+0
Sanetrnik
Vojtech
Brno
Telight
Industry
CZ
UTC+1
Sathappan
Abbirami
Doha
Sidra Medicine
Gov.
QA
UTC+3
Schmied
Christopher
Berlin
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP)
Leibniz
DE
UTC+1
Schütz
Lucas
Heidelberg
Ariadne.ai AG
Industry
DE
UTC+2
Scott
Ryan
Moffett Field
KBR/NASA Ames
Gov.
US
UTC-8
Sharma
Ved
New York
Rockefeller University
Univ.
US
UTC-4
Shemesh
Michal
Delft
TUD
Univ.
NL
UTC+1
Simm
Alan
Liverpool
Liverpool John Moores University
Univ.
GB
UTC+-0
Smith
Laura
New York
Rockefeller University Press
Univ.
US
UTC-4
Srinivasan
Sathya
Beaverton
ONPRC
Univ.
US
UTC-8
Stojiljkovic
Ana
London
The Institute of Cancer Research
Univ.
GB
UTC+-0
Strambio De Castillia
Caterina
Worcester
University of Massachusetts Medical School, Program in Molecular Medicine; Chan Zuckerberg Initiative; BINA Quality Control and Data Management Working Group
Univ.
US
UTC-4
Ta
Adam
Seattle
Sage Bionetworks
Private lab
US
UTC+-0
Taatjes
Douglas
Burlington
University of Vermont
Univ.
US
UTC-5
Tapia
Pablo
Bethesda
National Institutes of Health (NIH)
Gov.
US
UTC-4
Thornton
Staci
Storrs
University of Connecticut, Department of Kinesiology
Univ.
US
UTC-5
Tischer
Christian
Heidelberg
EMBL Heidelberg
EU-Org
DE
UTC+1
Vaahtokari
Anne
Calgary
University of Calgary
Univ.
CA
UTC-7
Valiente-Echeverría
Fernando
Santiago
Universidad de Chile
Univ.
CL
UTC-4
Verma
Jitender
Sonepat
Ashoka University
Univ.
IN
UTC+5
Vicidomini
Giuseppe
Genoa
Istituto Italiano di Tecnologia
Gov.
IT
UTC+1
Walther
Christa
Konstanz
German BioImaging-Gesellschaft für Mikroskopie und Bildanalyse e.V.
Univ.
DE
UTC+1
Weiss
Pierre
Toulouse
CNRS
Univ.
FR
UTC+2
Woods
Kali
Boise
Boise State University
Univ.
US
UTC-7
Last name First Name Town Organisation Affiliation Lab Affiliation Country Time Zone