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Working Group 1

33rd Meeting, 3rd of April 2024

Meeting date

03/04/2024 @ 5:00 PM (CET/CEST)

Meeting summary

We had a short round of presentation for new comers. We decided to pause just this time our work on our protocol and 2-photon microscopy modality to focus on irradiance, and had the pleasure to listen to two very nice presentations by Ronian Siew and then Alienor Lahlou. For those of you who missed it, the recordings can be found here.

Meeting documentation

32nd meeting, 5th of March 2024

Meeting date

05/03/2024 @ 5:00 PM (CET/CEST)

Meeting summary

We summarized the By-Laws’ presentation since everyone had seen it at least once. The by-laws and its accompanying documents (Code of Conduct – CoC, Terms of Reference – ToR, and Best Practices – BP) aim to ensure QUAREP-LiMi provides a diverse, equitable, inclusive and transparent environment for its community to gather, address and efficiently make decision to critical challenges. You can find previous recordings of the By-Laws presentation from WG2 here, as well as the slides here. In the folder named Decision Making Discussion https://nextcloud.quarep.org/index.php/f/445127 you will find the other relevant documents related to the by-laws: •BP_BestPractices for QUAREP-LiMi Operations.docx •CoC_WorkGroups.docx •Bylaws Draft_04_a.docx Here are our action items: 1.      WG1 needs to appoint one representative for the SC, ERB, and OB (two-year terms). 2.      WG1 needs to elect its co-chairs for the next two-year term. Nathalie and Laurent are happy to continue on for another two year. We would love to have a third co-chair. 3.      We need candidates! – Let us know if you are interested in being our WG1 representative for SC (ideally one of the co-chairs), ERB, or OB, or if you want to become a WG1 co-chair before March 12th. We also briefly brainstormed on known ways to measure irradiance and decided that a path forward would be to review a proposed definition (by WG13) and present a manuscript (journal club style) at our next meeting. WG1 will meet again on the 3rd of April and will then continue expanding the Illumination power stability protocol to multi-photons.

Meeting documentation

30th meeting, 7th of January 2024

Meeting date

07/02/2024 @ 5:00 PM (CET/CEST)

Meeting summary

First, our collaboration with WG-13 has been defined. Philippe Laissue (co-chair of WG13) talked about the mission of WG13 and how a protocol on how to measure irradiance could fit within the guidance on phototoxicity. Our first goal will be to define irradiance and write a small paragraph to summarize existing methods and guidelines on irradiance. Please share all references you have in this folder or directly in Zotero. We will define irradiance and discuss papers found at our next WG1 meeting (30 min each month). We then briefly discussed Robert Lees very relevant preprint on bioRxiv. We also made headway with version 3 of our protocol and included multi-photons specific comments and recommendations to steps 4 to 6 when needed. We will continue with step 7 at our next meeting. Please go to the protocol online here and add your comments and suggestions to the first 6 steps of the protocol. We will discuss all new comments at our next meeting.

Meeting documentation

29th meeting, 6th of December 2023

Meeting date

06/12/2023 @ 5:00 PM (CET/CEST)

Meeting summary

During this meeting, we branched version 2 of our protocole to extrend it to Multi-photon systems. We discussed and modified staps 1 to 3 of the protocol.

Meeting documentation

28th meeting, 1st of November 2023

Meeting date

01/11/2023 @ 5:00 PM (CET/CEST)

Meeting summary

Lin Yangchen presented his protocol and tools for “Irradiance Measurement on a spinning-disk confocal and TIRF microscope”. We decided to extend next time our protocol to 2P microscopy modality, and we collected the names of people in WG1 who want to collaborate with WG13 to create protocols on irradiance measurement and assessment of phytotoxicity. If you want also to join this subgroup, please contact Natalie Gaudreault.

Meeting documentation

27th meeting, 4th of October 2023

Meeting date

04/10/2023 @ 5:00 PM (CET/CEST)

Meeting summary

Andrii Repula, Product Support Engineer at Lumencor, presented his white paper and how they measure light source stability at his company.

Meeting documentation

Working Group 2

37th meeting, 11th of December 2023

Meeting date

11/12/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

36th meeting, 13th of November 2023

Meeting date

13/11/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

35th meeting, 10th of October 2023

Meeting date

10/10/2023 @ 5:00 AM (CET/CEST)

Meeting documentation

34th meeting, 11th of September 2023

Meeting date

11/09/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

33rd meeting, 14th of August 2023

Meeting date

14/08/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

32nd meeting, 10th of July 2023

Meeting date

10/07/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Working Group 3

29th meeting, 9th of January 2024

Meeting date

09/01/2024 @ 5:00 PM (CET/CEST)

Meeting documentation

28th meeting, 12th of December 2023

Meeting date

12/12/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

27th meeting, 14th of November 2023

Meeting date

14/11/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

26th meeting, 17th of October 2023

Meeting date

17/10/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

25th meeting, 5th of September 2023

Meeting date

05/09/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

24th meeting, 25th of July 2023

Meeting date

25/07/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Working Group 4

35th meeting, 19th of March 2024

Meeting date

19/03/2024 @ 5:00 PM (CET/CEST)

Meeting summary

WG04 pursues the analyses of 1um beads datasets for color co-registration, comparing different software. There was a discussion regarding measurements of signal to background ratio on aging bead preparations. The group discussed about how detectors settings and metadata can have an impact on the co-registration analysis results. Please note the next WG04 monthly meeting date. It was moved because of QUAREP annual meeting. Lastly, many thanks to the members who agreed to become co-chairs and representatives of WG-04: Maria Azevedo, Aurélien Dauphin, Christian Kukat, Judith Lacoste and Ileana Micu.

Meeting documentation

34th meeting, 20th of February 2024

Meeting date

20/02/2024 @ 5:00 PM (CET/CEST)

Meeting summary

Today the proposed QUAREP by-laws were presented. WG04 is grateful to those who worked with David Grunwald for the preparation of this impressive document. The by-laws will be submitted for approval during the QUAREP annual meeting next April. In the mean time, WG04 is asking its members to come forward for the following positions in our workgroup: WG04 co-chairs, a WG04 steering committee representative, a WG04 editorial review board representative and a WG04 ombuds board representative. In addition, QUAREP will need to elect 13 persons on the steering committee and 3 persons on the ombuds board. Our organisation just reached 600 members, for sure there will be new people joining on the above committees to make QUAREP better. Please let us know of your interest in the above positions. A big thanks in advance!

Meeting documentation

33rd meeting, 16th of January 2024

Meeting date

16/01/2024 @ 5:00 PM (CET/CEST)

Meeting documentation

32nd meeting, 19th of December 2023

Meeting date

19/12/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

31st meeting, 21st of November 2023

Meeting date

21/11/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

30th meeting, 23rd of October 2023

Meeting date

23/10/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Working Group 5

35th meeting, 11th of January 2024

Meeting date

11/01/2024 @ 3:30 PM (CET/CEST)

Meeting documentation

34th meeting, 7th of December 2023

Meeting date

07/12/2023 @ 3:30 PM (CET/CEST)

Meeting documentation

33rd meeting, 9th of November 2023

Meeting date

09/11/2023 @ 3:30 PM (CET/CEST)

Meeting documentation

32nd meeting, 19th of October 2023

Meeting date

19/10/2023 @ 3:30 PM (CET/CEST)

Meeting documentation

31st meeting, 14th of September 2023

Meeting date

14/09/2023 @ 3:30 PM (CET/CEST)

Meeting documentation

30th meeting, 13th of July 2023

Meeting date

13/07/2023 @ 3:30 PM (CET/CEST)

Meeting documentation

Working Group 6

28th meeting, 13th of December 2023

Meeting date

13/12/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

28th meeting, 8th of November 2023

Meeting date

08/11/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

27th meeting, 11th of October 2023

Meeting date

11/10/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

26th meeting, 13th of September 2023

Meeting date

13/09/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

25th meeting, 12th of July 2023

Meeting date

12/07/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

24th meeting, 14th of June 2023

Meeting date

14/06/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

Working Group 7

26th meeting, 4th of December 2023

Meeting date

04/12/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Subgroup Model, 11th meeting, 4th of December 2023

Meeting date

04/12/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Subgroup Model, 10th meeting, 6th of November 2023

Meeting date

06/11/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Subgroup Model, 9th meeting, 2nd of October 2023

Meeting date

02/10/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

25th meeting, 18th of September 2023

Meeting date

18/09/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Subgroup Model, 8th meeting, 3rd of July 2023

Meeting date

03/07/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

Working Group 8

10th meeting, 7th of January 2021

Meeting date

07/01/2021 @ 4:00 PM (CET/CEST)

Meeting documentation

9th meeting, 21st of December 2020

Meeting documentation

8th meeting, 14th of December 2020

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7th meeting, 10 of December 2020

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6th meeting, 1st of December 2020

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5th meeting, 19th of November 2020

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Working Group 9

31st meeting, 6th of February 2024

Meeting date

06/02/2024 @ 4:00 PM (CET/CEST)

Meeting documentation

30th meeting, 8th of January 2024

Meeting date

09/01/2024 @ 4:00 PM (CET/CEST)

Meeting documentation

29th meeting, 5th of December 2023

Meeting date

05/12/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

28th meeting, 7th of November 2023

Meeting date

07/11/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

27th meeting, 10th of October 2023

Meeting date

10/10/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

26th meeting, 5th of September 2023

Meeting date

05/09/2023 @ 4:00 PM (CET/CEST)

Meeting documentation

Working Group 10

30th meeting, 12th of March 2024

Meeting date

12/03/2024 @ 4:00 PM (CET/CEST)

Meeting summary

This meeting will be dedicated to a quick review of the RID parameter, a global discussion about the new parameter AS told us about and importantly, the ByLaws document with the need of volunteer candidates for the various positions (SC, EBR, OB).

Meeting documentation

29th meeting, 13th of February 2024

Meeting date

13/02/2024 @ 4:00 PM (CET/CEST)

Meeting documentation

28th meeting, 9th of May 2023

Meeting date

09/05/2023 @ 4:00 PM (CET/CEST)

Meeting summary

This meeting will be dedicated to a quick review of the annual meeting from the WG10 point of view. Then, the SubGroup 1 (RID) will present their progresses.

Meeting documentation

27th meeting, 11th of April 2023

Meeting date

11/04/2023 @ 4:00 PM (CET/CEST)

Meeting summary

For this meeting, we will need to take a decision about SBR parameter and all over parameter we decided not to consider. + 10 min per sub group to discuss briefly the progresses that have been made. + preparation of the Annual meeting

Meeting documentation

26th meeting, 14th of February 2023

Meeting date

14/02/2023 @ 4:00 PM (CET/CEST)

Meeting summary

For our second meeting of 2023, we are going to discuss about SBR definition and Image Resolution Estimation (IRE) parameters.

Meeting documentation

25th meeting, 17th of January 2023

Meeting date

17/01/2023 @ 4:00 PM (CET/CEST)

Meeting summary

For our first meeting of 2023, let’s just take 10 min per sub group to discuss briefly the progresses that have been made. And happy new year of course 🙂

Meeting documentation

Working Group 11

29th Meeting – March 28, 2024

Meeting date

29/03/2024 @ 12:58 AM (CET/CEST)

Meeting summary

Vote on representative for ERB and OB. Continue discussing the decision tree for settings depending on applications

Meeting documentation

26th meeting, 7th of December 2023

Meeting date

07/12/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

25th meeting, 26th of October 2023

Meeting date

26/10/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

24th meeting, 28th of September 2023

Meeting date

28/09/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

23rd meeting, 25th of May 2023

Meeting date

25/05/2023 @ 5:00 PM (CET/CEST)

Meeting documentation

22nd meeting, 27th of April 2023

Meeting date

27/04/2023 @ 5:00 PM (CET/CEST)

Meeting documentation