WG 11 – Microscopy publication standards

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WG 11 – Objectives

WG11 will work together with scientific publishers to promote the adoption of best practices in the reporting of metadata (for both image acquisition and analysis) throughout scientific journals and books. Only by ensuring all relevant constituents researchers and imaging scientists submitting publications and designing research; editors, scientific publishers, and reviewers monitoring and preparing publications; and funders, researchers, and educators evaluating and disseminating publications) are working in concert can we raise the bar to ensure reproducibility in imaging experiments. WG11 will focus on the following activities: 1) inform scientific publishers of the standards and metadata put forward by the other QUAREP-LiMi Working Groups; 2) liaise with and encourage individual journals to modify their imaging guidelines to align with these recommendations; 3) work together with the scientific publishers to enforce high standards of imaging metadata reporting in all research works accepted for publication; 4) facilitate the involvement of technical reviewers with significant microscopy expertise during the review of papers that rely heavily on imaging techniques; 5) work together with publishers to promote and increase the appropriate acknowledgement and co-authorship of imaging scientists and core imaging facilities in publications; 6) encourage publishers to compel authors to make raw imaging data available if, and when, required for validation of published research and to make reasonable suggestions regarding duration of storage of raw imaging data relevant to published results; 7) propose minimum standards for figure quality, figure colour selection, scale bars, inserts, annotations and labelling, in order to render all microscopy figures easily interpretable by experts and non-experts alike.

WG 11 – Co-Chairs

WG 11 - Latest News

WG11, as part of its mission to enhance publication standards for reproducible image-based science and in response to an inquiry from Nature Methods, has defined the "Bare Minimum Requirements for Microscopy Methods Reporting". This checklist, built upon the REMBI framework and the NBO-Q metadata model, is designed to guide researchers, scientific journals, and editors in the peer-review process, ensuring that microscopy methods across most applications include sufficient details for reproducibility.

We are delighted to warmly welcome our first member from Thailand, Dr Tassanee Lerksuthirat from the Research Center Ramathibodi Hospital just joined Working Group 1, 7, 8, 10, 11 and 12 of QUAREP-LiMi.

We welcome a new member to our working groups 2, 3, 10, 11 and 12. Mr. Aleš Kladnik from, the Biotechnical Faculty of University of Ljubljana in Slovenia just joined QUAREP-LiMi.

 

Last meeting: 24th April 2025, 5:00 pm

A “Bare Minimum Standards for Microscopy Methods Reporting or Establishing Community-Driven Minimal Guidelines for Microscopy Methods Reporting” has been defined bei WG 11.

You can access the guidelines here.

39th meeting, 24th of April 2025

Meeting date

24/04/2025 @ 5:00 PM (CET/CEST)

Meeting documentation

38th meeting, 27th of March 2025

Meeting date

27/03/2025 @ 5:00 PM (CET/CEST)

Meeting documentation

37th meeting, 27th of February 2025

Meeting date

27/02/2025 @ 5:00 PM (CET/CEST)

Meeting documentation

36th meeting, 23rd of January 2025

Meeting date

23/01/2025 @ 11:00 AM (CET/CEST)

Meeting summary

We are going to have a discussion about the design of the “Minimal Checklist” for journals.

Meeting documentation

35th 05th of December 2024

Meeting date

05/12/2024 @ 11:00 AM (CET/CEST)

Meeting summary

We are going to have a final discussion on the “Minimal Checklist” for journals. WG7 has been working very hard to align the checklist with the Metadata model.

Meeting documentation

34th 24th of October 2024

Meeting date

24/10/2024 @ 10:00 AM (CET/CEST)

Meeting documentation

33rd 10th of October 2024

Meeting date

10/10/2024 @ 11:00 AM (CET/CEST)

Meeting summary

Paula shares that bare-minimum checklist is moving forward. It took on new momentum at BINA meeting. SC endorsed content at Oct. SC meeting. Caterina and Judith are aligning with NBO-Q schema. Some topics have been discussed. Decission Tree for chosing reporting structure. Paula collected input from last meeting MicCheck tree updates. is there a way to align MicCheck with quarep work? Can users actually answer questions at the level of MicCheck?

Meeting documentation

32nd meeting, 27th of June 2024

Meeting date

27/06/2024 @ 5:00 PM (CET/CEST)

Meeting documentation

31st meeting, 23rd of May 2024

Meeting date

23/05/2024 @ 5:00 PM (CET/CEST)

Meeting documentation

30th meeting, 25th of April 2024

Meeting date

25/04/2024 @ 5:00 PM (CET/CEST)

Meeting documentation

Memberlist WG 11